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High-throughput and cost-effective sequencing software

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Gencove developed a unique, end-to-end, cloud-based platform to deliver genome-wide information through low-pass sequencing and imputation. Our platform is flexible and future-proofed. We partner with you to process the samples, help you choose the best sequencing options, conduct the analysis, and deliver the information you need in a format that easily integrates into your current workflows.


We offer three software-as-a-service levels: Professional, Business and Enterprise. Each tier offers progressively more options or customizations. Please see below for more information about the features and functionality of the platform.


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Professional

Species-specific* packages

  • Gencove platform access
  • FastQ file uploads
  • Multiple quality checks

Single user

Data access and management

  • API or CLI

Low-pass sequencing

  • Aligned BAM
  • Imputed VCF to reference genomes

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Business

Species-specific* packages

  • Gencove platform access
  • FastQ file uploads
  • Multiple quality checks

Unlimited users

Data access and management

  • API or CLI
  • Special sharing and permissions
  • Webhooks and custom notifications
  • Merged VCF

Low-pass sequencing

  • Aligned BAM
  • Imputed VCF to reference genomes

Advanced analytics

  • Custom developed haplotype reference panel for your sole use

Client support and services

  • Library prep: training manuals and onboarding resources
  • Dedicated success manager

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Enterprise

Species-specific* packages

  • Gencove platform access
  • FastQ file uploads
  • Multiple quality checks

Unlimited users

Data access and management

  • API or CLI
  • Special sharing and permissions
  • Webhooks and custom notifications
  • Merged VCF
  • HIPAA/Audit trails
  • Single tenant infrastructure
  • Extended data lifecycle management
  • Compliance agreements

Low-pass sequencing

  • Aligned BAM
  • Imputed VCF to reference genomes
  • Targeted capture or Exome upgrade

Advanced analytics

  • Custom developed haplotype reference panel for your sole use
  • Proprietary Polygenic Risk Scoring
  • Associate genetic variation with phenotypes for Genome-Wide Association Studies (GWAS)
  • Novel Variant Detection
  • Germline variant calling (WGS, WES)
  • Somatic variant calling (Tumor/Normal)
  • Microbiome profiling

Client support and services

  • Library prep: training manuals and onboarding resources
  • Dedicated success manager
  • Custom sequencing protocol development

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More power and flexibility

Start with ready-to-run or custom pipelines

Choose an existing pipeline or work with Gencove’s scientists to optimize the platform for your application

Select the appropriate deployment model that fits your needs

End-to-end

From biological sample to data through our sequencing partners that have already integrated with Gencove

In-house

Set up the low-pass lab workflow in your lab and seamlessly use the Gencove imputation and analysis SaaS

SaaS-only

Integrate Gencove directly with your existing systems or greenfield deployments

Gencove’s platform is scalable and fast to set up for your organization’s high-throughput genotyping and analysis programs

Cloud scale

Cloud-scale

Gencove is cloud-native, meaning end-to-end analysis is done in the cloud

Security

Security

Rest assured Gencove is using industry-accepted best practices and frameworks

Compliance

Compliance

Gencove is HIPAA compliant and aligns itself with ISO27001 and SOC2

Speed

Speed

Fast analytics together with lightning-fast uploads and downloads through CLI tools

Collaboration

Collaboration

Share projects with colleagues across your organization

Integration

Integration

Integrate directly with our API for production-ready workloads

Customization

Customization

Private configurations and reference panels for custom populations can be made available

Support

Support

If you run into a snag, our team is there to help quickly and efficiently