High-throughput and cost-effective sequencing software
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Gencove developed a unique, end-to-end, cloud-based platform to deliver genome-wide information through low-pass sequencing and imputation. Our platform is flexible and future-proofed. We partner with you to process the samples, help you choose the best sequencing options, conduct the analysis, and deliver the information you need in a format that easily integrates into your current workflows.
We offer three software-as-a-service levels: Professional, Business and Enterprise. Each tier offers progressively more options or customizations. Please see below for more information about the features and functionality of the platform.
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Species-specific* packages
- Gencove platform access
- FastQ file uploads
- Multiple quality checks
Single user
Data access and management
- API or CLI
Low-pass sequencing
- Aligned BAM
- Imputed VCF to reference genomes
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Species-specific* packages
- Gencove platform access
- FastQ file uploads
- Multiple quality checks
Unlimited users
Data access and management
- API or CLI
- Special sharing and permissions
- Webhooks and custom notifications
- Merged VCF
Low-pass sequencing
- Aligned BAM
- Imputed VCF to reference genomes
Advanced analytics
- Custom developed haplotype reference panel for your sole use
Client support and services
- Library prep: training manuals and onboarding resources
- Dedicated success manager
Get a quote >
Species-specific* packages
- Gencove platform access
- FastQ file uploads
- Multiple quality checks
Unlimited users
Data access and management
- API or CLI
- Special sharing and permissions
- Webhooks and custom notifications
- Merged VCF
- HIPAA/Audit trails
- Single tenant infrastructure
- Extended data lifecycle management
- Compliance agreements
Low-pass sequencing
- Aligned BAM
- Imputed VCF to reference genomes
- Targeted capture or Exome upgrade
Advanced analytics
- Custom developed haplotype reference panel for your sole use
- Proprietary Polygenic Risk Scoring
- Associate genetic variation with phenotypes for Genome-Wide Association Studies (GWAS)
- Novel Variant Detection
- Germline variant calling (WGS, WES)
- Somatic variant calling (Tumor/Normal)
- Microbiome profiling
Client support and services
- Library prep: training manuals and onboarding resources
- Dedicated success manager
- Custom sequencing protocol development
Get a quote >
More power and flexibility
Start with ready-to-run or custom pipelines
Choose an existing pipeline or work with Gencove’s scientists to optimize the platform for your application
Select the appropriate deployment model that fits your needs
End-to-end
From biological sample to data through our sequencing partners that have already integrated with Gencove
In-house
Set up the low-pass lab workflow in your lab and seamlessly use the Gencove imputation and analysis SaaS
SaaS-only
Integrate Gencove directly with your existing systems or greenfield deployments
Gencove’s platform is scalable and fast to set up for your organization’s high-throughput genotyping and analysis programs
Cloud-scale
Gencove is cloud-native, meaning end-to-end analysis is done in the cloud
Security
Rest assured Gencove is using industry-accepted best practices and frameworks
Compliance
Gencove is HIPAA compliant and aligns itself with ISO27001 and SOC2
Speed
Fast analytics together with lightning-fast uploads and downloads through CLI tools
Collaboration
Share projects with colleagues across your organization
Integration
Integrate directly with our API for production-ready workloads
Customization
Private configurations and reference panels for custom populations can be made available
Support
If you run into a snag, our team is there to help quickly and efficiently
