Manage genetic data through scalable, repeatable, and secure pipelines

Go from FASTQs to biological insights with our scalable and easy-to-use cloud-based tools

Focus on your results, not managing pipelines and workflows

Genotype imputation, variant and CNV calling, ancestry or strain analysis, polygenic risk scores. They’re all here and ready to go. No need to manage pipelines or figure out how to optimize every setting in the bioinformatics tool chain—we’ve got you covered.

Imputed VCFs

Genotypes at millions of genetic variants from your selected imputation reference panel

Aligned BAM files

Sequence alignments against the reference genome in a portable format

Reference panels

Best-in-class imputation panels, or we'll help customize an imputation panel for your species or population of interest

Quality control metrics

A suite of quality control measures to give you confidence in your sequencing data

Ancestry/breed

Ancestry estimates from a set of 26 reference populations for human samples. For select non-human species, receive breed/strain analysis.

Enjoy the benefits of working in the cloud without the hassle

A fully managed end-to-end secondary genomics analysis platform to run automated analyses—all you need to do is upload FASTQs. Provisioning of cloud resources and data storage are all taken care of so you never have to worry about out-of-control costs.

Web, CLI, API: use the right tool for the job

You can access and work with your data in the way that suits you. Want to manually explore the data from your projects and spot-check individual samples? Use the web dashboard. Want to process or download data in bulk? We have a command-line interface. Or to build fully-automated workflows, integrate with our event-driven API.

Easily collaborate across your organization

Share data with collaborators with a fully-featured permissions system, invite members to your organization to run projects, and easily enable other analysts to access your results. Our versioned pipelines ensure you're always working together from the same data.

Dig into the Gencove Base documentation here >

Learn more about teams who have leveraged the power of the Gencove platform

We empower data science teams to achieve more by abstracting away data processing, removing the need for infrastructure management, and reducing operational complexity.

Weizmann Institute of Science

Genome-wide and phenome-wide associations: Advancing our understanding of the genetic contributions to health