The integrated solution for genomic data generation, analysis, and management

Gencove Explorer is a cloud-based tertiary genomics computing solution, built to enable scientists to organize, analyze, and visualize their genomic datasets all in one place.

Embrace the efficiency of Shortcuts for common bioinformatics workflows

Use Shortcuts, a library of built in methods for common genomic analyses, to fast track:

• Merging, filtering, and annotating VCFs

• Calculating genotype discordance

• Performing genome-wide association studies

• Developing and calculating polygenic risk scores

Access the expertise of Gencove’s data science team

• Consultative on-ramp project with dedicated data science support

Robust cloud infrastructure without the hassle

• Scalable compute cluster with private storage

• Flexible, genomics oriented, with an easy-to-use interface and native integration to Gencove datasets

Focus on results, not managing pipelines and workflows

• Read alignment
• Imputation
• Variant calling
• Breed analysis
• Quality control
• Sample metadata store

Access your data in the way that works for you and your team

• Web, CLI and API access
• Third party integrations like S3 buckets and BaseSpace

Dig into the documentation here

Flexibility and ease of use with a sequencer agnostic approach

• Transfer raw sequencing data from any sequencing instrument to the cloud

Reduce the headaches that come with transferring data to the cloud

• Demultiplex base calls into FASTQ files
• Perform sequencing run-level quality control
• Automatic downstream analysis kick off

Sequencing services designed for scale

• Low-pass sequencing for the power of whole genome sequencing at the price of an array
• High-coverage sequencing for comprehensive variant discovery
• Innovative approaches like low-pass WGS plus capture across a range of species

Flexible and adaptable lab requirements

• Partner labs around the world that accept different sample types and maintain regulatory classifications
• Capability to handle both clinical and research samples

Seamless and durable data delivery

• Data delivered through the Gencove platform
• Range of deliverables from raw FASTQs to comprehensive quality control statistics to variant calls
• Easy-to-use web dashboard, command line interface, and/or API

Custom probe design for target capture at critical sites

• Access a lab team with extensive experience designing and selecting for a higher-fidelity analysis at key loci

Cost-effective and high-throughput library preparation methods

• The Gencove team has developed a range of library preparation methods to keep costs down

Download our free guide to selecting the right library preparation kit for your next sequencing job